Basic Information
Locus ID:
COCNU_05G006810
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 44839250 | 44841808 | - | COCNU_05G006810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 84,598.69 Da | 44.37 | 70.73 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 466 | 495 | 9.8E-4 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 628 | 748 | 7.6E-40 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 537 | 562 | 0.055 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 437 | 463 | 0.023 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 373 | 394 | 0.079 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 513 | 651 | 9.2E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 400 | 512 | 1.3E-19 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 466 | 498 | 0.0021 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 463 | 497 | 10.533867 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 362 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_010937064.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial isoform X1 [Elaeis guineensis] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0I8H8 | Pentatricopeptide repeat-containing protein, mitochondrial OS=Cocos nucifera OX=13894 GN=COCNU_05G006810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology