Basic Information
Locus ID:
COCNU_05G005120
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 34130232 | 34147514 | - | COCNU_05G005120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 114,807.70 Da | 58.51 | 68.72 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 507 | 811 | 1.0107E-134 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 508 | 810 | 3.5E-44 | IPR001394 |
| Pfam | PF01753 | MYND finger | 79 | 116 | 5.9E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 504 | 819 | 1.75E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 75 | 117 | 2.44E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 500 | 826 | 1.7E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 71 | 119 | 2.0E-13 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 79 | 116 | 11.758225 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 508 | 813 | 51.361618 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 509 | 524 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 79 | 116 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 914 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 195 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_010942663.1 | ubiquitin carboxyl-terminal hydrolase 17 [Elaeis guineensis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N1Q0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Cocos nucifera OX=13894 GN=COCNU_05G005120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology