Basic Information
Locus ID:
COCNU_04G015700
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 65916823 | 65918853 | + | COCNU_04G015700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 43,988.84 Da | 75.44 | 62.66 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 201 | 242 | 1.49234E-23 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 274 | 383 | 2.7E-40 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 6 | 36 | 1.4E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 200 | 242 | 1.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 248 | 2.83E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 249 | 2.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 201 | 241 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 201 | 242 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 379 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010920534.1 | probable E3 ubiquitin-protein ligase RHC2A [Elaeis guineensis] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I7V8 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_04G015700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology