Basic Information
Locus ID:
COCNU_04G015470
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 65118738 | 65148115 | - | COCNU_04G015470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 151,966.67 Da | 36.21 | 80.02 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 704 | 841 | 2.35455E-27 | - |
| Pfam | PF06480 | FtsH Extracellular | 498 | 595 | 2.4E-8 | IPR011546 |
| Pfam | PF13419 | Haloacid dehalogenase-like hydrolase | 1254 | 1326 | 2.1E-5 | IPR041492 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 299 | 1.7E-4 | IPR001680 |
| Pfam | PF17862 | AAA+ lid domain | 870 | 909 | 3.4E-12 | IPR041569 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 344 | 0.012 | IPR001680 |
| Pfam | PF01434 | Peptidase family M41 | 924 | 1105 | 1.5E-64 | IPR000642 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 708 | 839 | 2.4E-40 | IPR003959 |
| SUPERFAMILY | SSF56784 | HAD-like | 1137 | 1354 | 2.07E-20 | IPR036412 |
| SUPERFAMILY | SSF140990 | FtsH protease domain-like | 924 | 1114 | 1.57E-62 | IPR037219 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 667 | 914 | 9.68E-67 | IPR027417 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 144 | 392 | 7.63E-45 | IPR036322 |
| Gene3D | G3DSA:1.10.8.60 | - | 842 | 925 | 3.9E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 92 | 407 | 5.4E-102 | IPR015943 |
| Gene3D | G3DSA:3.40.1690.20 | - | 497 | 606 | 7.6E-31 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 1173 | 1353 | 2.9E-44 | IPR023214 |
| Gene3D | G3DSA:1.20.58.760 | Peptidase M41 | 926 | 1125 | 3.1E-66 | IPR037219 |
| Gene3D | G3DSA:3.40.50.300 | - | 650 | 839 | 4.7E-68 | IPR027417 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 344 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 173 | 200.0 | IPR001680 |
| SMART | SM00382 | AAA_5 | 703 | 843 | 4.8E-21 | IPR003593 |
| SMART | SM00320 | WD40_4 | 219 | 256 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 216 | 0.033 | IPR001680 |
| TIGRFAM | TIGR01241 | FtsH_fam: ATP-dependent metallopeptidase HflB | 609 | 1107 | 6.1E-201 | IPR005936 |
| TIGRFAM | TIGR01509 | HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 | 1279 | 1326 | 2.1E-11 | IPR006439 |
| TIGRFAM | TIGR01993 | Pyr-5-nucltdase: pyrimidine 5'-nucleotidase | 1134 | 1326 | 5.9E-54 | IPR010237 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 299 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 225 | 9.104886 | IPR001680 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 811 | 829 | - | IPR003960 |
| Hamap | MF_01458 | ATP-dependent zinc metalloprotease FtsH [ftsH]. | 63 | 1134 | 32.887836 | IPR005936 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 489 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29080.1 | FTSH protease 3. encodes an FtsH protease that is localized to the mitochondrion | 0 |
| RefSeq | XP_010920548.1 | ATP-dependent zinc metalloprotease FTSH 8, mitochondrial [Elaeis guineensis] | 0 |
| Q0DHL4 | ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0I7D2 | Putative ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Cocos nucifera OX=13894 GN=COCNU_04G015470 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology