Basic Information
Locus ID:
COCNU_04G015200
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 64656286 | 64661454 | - | COCNU_04G015200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 74,043.29 Da | 39.69 | 97.06 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 268 | 310 | 8.84982E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 472 | 510 | 1.0E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 389 | 428 | 8.1E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 554 | 592 | 7.1E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 264 | 334 | 2.6E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 261 | 339 | 3.09E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 363 | 638 | 2.56E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 348 | 473 | 1.2E-26 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 21 | 132 | 2.6E-13 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 474 | 641 | 4.0E-29 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 264 | 337 | 8.3E-33 | IPR013083 |
| SMART | SM00185 | arm_5 | 553 | 593 | 90.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 471 | 511 | 5.0E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 430 | 470 | 5.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 389 | 429 | 7.7E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 267 | 330 | 2.6E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 512 | 552 | 54.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 482 | 524 | 9.0474 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 441 | 483 | 8.5574 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 400 | 442 | 12.4424 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 263 | 337 | 44.805237 | IPR003613 |
| Coils | Coil | Coil | 628 | 662 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_010920613.1 | protein spotted leaf 11 [Elaeis guineensis] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N1E7 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_04G015200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology