Basic Information
Locus ID:
COCNU_04G014920
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 63931947 | 63934578 | + | COCNU_04G014920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 38,592.86 Da | 25.21 | 87.34 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 199 | 354 | 3.00513E-82 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 174 | 6.66617E-65 | - |
| Pfam | PF00190 | Cupin | 197 | 339 | 8.5E-24 | IPR006045 |
| Pfam | PF00190 | Cupin | 11 | 157 | 1.4E-28 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 15 | 346 | 4.16E-45 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 196 | 357 | 2.6E-50 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 9 | 179 | 5.3E-31 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 158 | 2.6E-33 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 196 | 340 | 7.0E-14 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 259 | 275 | 1.3E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 212 | 232 | 1.3E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 317 | 334 | 1.3E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 277 | 292 | 1.3E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 295 | 313 | 1.3E-16 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_010920723.1 | glutelin type-D 1 [Elaeis guineensis] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0N130 | Glutelin type-D 1 OS=Cocos nucifera OX=13894 GN=COCNU_04G014920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology