Basic Information
Locus ID:
COCNU_04G013670
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 61162039 | 61164458 | + | COCNU_04G013670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 65,167.10 Da | 33.22 | 90.81 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 1.38128E-89 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 1.04676E-90 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 353 | 2.7E-21 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 212 | 2.6E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 5.2E-16 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 220 | 1.54E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 236 | 383 | 6.54E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 4.83E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 1.5E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 217 | 5.6E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 587 | 3.2E-57 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 600 | 5.7E-213 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_010920798.1 | pyruvate decarboxylase 1 [Elaeis guineensis] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0I726 | pyruvate decarboxylase OS=Cocos nucifera OX=13894 GN=COCNU_04G013670 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology