Basic Information
Locus ID:
COCNU_04G012530
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 58611772 | 58618113 | - | COCNU_04G012530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 45,206.88 Da | 36.00 | 84.11 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 33 | 289 | 1.62E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 24 | 204 | 6.2E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 335 | 2.2E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 288 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 32 | 70 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 157 | 350.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_019706260.1 | autophagy-related protein 18c isoform X1 [Elaeis guineensis] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N0Q7 | Autophagy-related protein 18c OS=Cocos nucifera OX=13894 GN=COCNU_04G012530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology