Basic Information
Locus ID:
COCNU_04G008850
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
RHC1A
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 41900278 | 41901072 | - | COCNU_04G008850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 30,185.56 Da | 66.33 | 47.65 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 170 | 211 | 4.02651E-25 | - |
| Pfam | PF13639 | Ring finger domain | 169 | 211 | 1.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 216 | 3.98E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 216 | 2.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 170 | 210 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 170 | 211 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 240 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010921861.1 | probable E3 ubiquitin-protein ligase RHC1A [Elaeis guineensis] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I6Y8 | Putative E3 ubiquitin-protein ligase RHC1A OS=Cocos nucifera OX=13894 GN=COCNU_04G008850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology