Basic Information
Locus ID:
COCNU_04G008610
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 39543671 | 39575183 | + | COCNU_04G008610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 15,025.19 Da | 32.49 | 106.69 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 1 | 129 | 2.1E-39 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 126 | 1.77E-11 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 134 | 6.9E-36 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 1 | 89 | 15.085979 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 99 | 124 | 9.747006 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 111 | 119 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 108 | 136 | 1.0E-34 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 60 | 89 | 1.0E-34 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 22 | 51 | 1.0E-34 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_010907257.1 | DNA repair protein recA homolog 2, mitochondrial isoform X4 [Elaeis guineensis] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0MZZ2 | Putative DNA repair protein recA, mitochondrial OS=Cocos nucifera OX=13894 GN=COCNU_04G008610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology