Basic Information
Locus ID:
COCNU_04G006270
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 19620989 | 19638139 | - | COCNU_04G006270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 71,881.52 Da | 47.25 | 86.08 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 198 | 460 | 7.51518E-133 | - |
| Pfam | PF00069 | Protein kinase domain | 199 | 461 | 5.8E-71 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 485 | 612 | 1.44E-14 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 198 | 512 | 8.36E-84 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 480 | 620 | 2.7E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 289 | 472 | 5.0E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 192 | 288 | 1.4E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 501 | 570 | 2.7E-14 | - |
| SMART | SM00220 | serkin_6 | 199 | 461 | 9.1E-101 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 199 | 461 | 50.576412 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 323 | 335 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 205 | 231 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41140.1 | CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1). | 0 |
| RefSeq | XP_038980673.1 | calcium/calmodulin-dependent serine/threonine-protein kinase 1-like isoform X2 [Phoenix dactylifera] | 0 |
| O80673 | CDPK-related kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I5P0 | CDPK-related kinase 1 OS=Cocos nucifera OX=13894 GN=COCNU_04G006270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology