Basic Information
Locus ID:
COCNU_04G005820
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
GFPT2
Description:
SIS domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 16364142 | 16378747 | - | COCNU_04G005820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 75,511.54 Da | 37.02 | 97.06 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05008 | SIS_GlmS_GlmD_1 | 372 | 497 | 4.46475E-58 | IPR035466 |
| CDD | cd05009 | SIS_GlmS_GlmD_2 | 530 | 685 | 2.27075E-64 | IPR035490 |
| CDD | cd00714 | GFAT | 2 | 288 | 2.43809E-97 | - |
| Pfam | PF13522 | Glutamine amidotransferase domain | 107 | 212 | 3.0E-15 | - |
| Pfam | PF01380 | SIS domain | 538 | 669 | 7.5E-22 | IPR001347 |
| Pfam | PF01380 | SIS domain | 367 | 494 | 7.5E-33 | IPR001347 |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 2 | 297 | 1.47E-50 | IPR029055 |
| SUPERFAMILY | SSF53697 | SIS domain | 324 | 686 | 5.47E-100 | - |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 2 | 312 | 2.9E-67 | IPR029055 |
| Gene3D | G3DSA:3.40.50.10490 | - | 325 | 686 | 1.4E-147 | - |
| Gene3D | G3DSA:3.40.50.10490 | - | 523 | 672 | 1.4E-147 | - |
| TIGRFAM | TIGR01135 | glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) | 76 | 685 | 3.4E-163 | IPR005855 |
| ProSiteProfiles | PS51464 | SIS domain profile. | 534 | 677 | 19.832211 | IPR001347 |
| ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 2 | 291 | 37.410076 | IPR017932 |
| ProSiteProfiles | PS51464 | SIS domain profile. | 363 | 502 | 26.211962 | IPR001347 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24090.1 | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases. | 0 |
| RefSeq | XP_010922125.1 | glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 isoform X1 [Elaeis guineensis] | 0 |
| Q9LIP9 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Arabidopsis thaliana OX=3702 GN=GFAT1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0I5L1 | glutamine--fructose-6-phosphate transaminase (isomerizing) OS=Cocos nucifera OX=13894 GN=COCNU_04G005820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1584, jg29007, jg32253 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16408 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035683 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21728, Sbi_jg22091 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16015 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008633, GOSA_00008634 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63038, Sgl67660 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017131, gene:ENSEOMG00000017620 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0017260, CQ.Regalona.r1.2AG0017270 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30096340, pistato.v30096470 |
| Apiaceae | Apium graveolens | 1 | Ag1G00255 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705007, gene-LOC103709035 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.830.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G22610, Ftri12G14725 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002424m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g037190.2N, BniB03g025350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2885 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3034 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0953s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g09430 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1599 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014897 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23424 |
| Poaceae | Echinochloa crus-galli | 5 | AH04.164, AH07.1208, BH04.184, CH04.194, CH05.186 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0380200, gene-QOZ80_5BG0427280 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0356370.1, HORVU.MOREX.r3.4HG0356380.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003413, gene-QYE76_065176 |
| Poaceae | Oryza coarctata | 4 | Oco21G000440, Oco22G001190, Oco23G001210, Oco24G000550 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g03900.1, LOC_Os12g03720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G009700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0103696, Pt_Chr0103701, Pt_Chr0702959 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G021550, Chr06G023150, Chr16G008920, Chr17G007930 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G204100, Tel4E01G204200, Tel5E01G245600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029900, gene_TRIDC4BG020700 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G187100.2, TraesCS4B02G130800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163520_P001, Zm00001eb405240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25726 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24682 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1015, evm.TU.LG08.526, evm.TU.LG15.935 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1493 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12789, nbisL1-mrna-29309 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13699, nbisL1-mrna-20509 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22501 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.13, evm.TU.utg000010l.447 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000737, Maker00002355 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1159, nbisL1-mrna-2294 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20484, nbisL1-mrna-24230 |
| Salicaceae | Populus euphratica | 2 | populus_peu25610, populus_peu25615 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644800 |
| Solanaceae | Solanum chilense | 1 | SOLCI002469000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023341 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11745 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1312 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30050.v3.1 |