Basic Information
Locus ID:
COCNU_04G003800
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 10306223 | 10318176 | + | COCNU_04G003800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 90,542.24 Da | 35.42 | 97.21 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 104 | 527 | 1.63765E-113 | IPR044644 |
| CDD | cd00018 | AP2 | 586 | 644 | 2.25045E-29 | IPR001471 |
| Pfam | PF01554 | MatE | 194 | 286 | 9.5E-8 | IPR002528 |
| Pfam | PF01554 | MatE | 349 | 470 | 5.0E-9 | IPR002528 |
| Pfam | PF00847 | AP2 domain | 586 | 636 | 1.6E-13 | IPR001471 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 587 | 645 | 5.82E-20 | IPR016177 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 587 | 646 | 8.9E-24 | IPR036955 |
| SMART | SM00380 | rav1_2 | 587 | 650 | 7.7E-35 | IPR001471 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 96 | 507 | 9.5E-86 | IPR002528 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 587 | 644 | 21.02158 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 588 | 599 | 6.9E-9 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 610 | 626 | 6.9E-9 | IPR001471 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 59 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38330.1 | MATE efflux family protein. | 0 |
| RefSeq | XP_010922639.1 | protein DETOXIFICATION 44, chloroplastic [Elaeis guineensis] | 0 |
| Q84K71 | Protein DETOXIFICATION 44, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N0D2 | Protein DETOXIFICATION OS=Cocos nucifera OX=13894 GN=COCNU_04G003800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology