Basic Information
Locus ID:
COCNU_04G003400
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9243873 | 9246856 | - | COCNU_04G003400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 65,094.89 Da | 30.78 | 93.49 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 405 | 587 | 1.17116E-89 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 46 | 205 | 2.98628E-90 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 240 | 347 | 4.4E-21 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 43 | 209 | 5.7E-34 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 450 | 574 | 9.4E-16 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 405 | 599 | 3.75E-43 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 235 | 381 | 1.64E-32 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 43 | 219 | 2.0E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 216 | 2.7E-59 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 399 | 586 | 1.7E-56 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 230 | 392 | 6.4E-42 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 38 | 599 | 9.1E-212 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_010922580.1 | pyruvate decarboxylase 2 [Elaeis guineensis] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0I5I6 | pyruvate decarboxylase OS=Cocos nucifera OX=13894 GN=COCNU_04G003400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology