Basic Information
Locus ID:
COCNU_04G002900
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 6955178 | 6966552 | + | COCNU_04G002900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 171,131.19 Da | 50.03 | 88.54 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1146 | 1539 | 2.35856E-111 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1241 | 1541 | 5.3E-80 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 98 | 529 | 6.72E-36 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1137 | 1534 | 2.62E-93 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1088 | 1315 | 1.1E-36 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 87 | 540 | 5.0E-50 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1423 | 1539 | 5.7E-33 | - |
| SMART | SM00119 | hect_3 | 1158 | 1541 | 5.3E-97 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1160 | 1541 | 62.163624 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 852 | 871 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 809 | 837 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_010922508.1 | E3 ubiquitin-protein ligase UPL4 [Elaeis guineensis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0N0B2 | HECT-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_04G002900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology