Basic Information
Locus ID:
COCNU_04G000980
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2821408 | 2824828 | + | COCNU_04G000980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 23,871.21 Da | 39.72 | 67.76 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 103 | 155 | 5.84993E-13 | - |
| Pfam | PF12906 | RING-variant domain | 103 | 154 | 5.7E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 158 | 1.29E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 164 | 7.4E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 102 | 155 | 2.8E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 95 | 161 | 20.308544 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_029120710.1 | uncharacterized protein LOC105046316 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0MZP0 | Putative E3 ubiquitin-protein ligase MARCH10 OS=Cocos nucifera OX=13894 GN=COCNU_04G000980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology