Basic Information
Locus ID:
COCNU_04G000320
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1089758 | 1117522 | + | COCNU_04G000320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 81,097.09 Da | 57.37 | 89.39 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 249 | 362 | 3.3E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 527 | 574 | 2.4E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 670 | 716 | 1.82E-8 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 512 | 575 | 2.81E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 127 | 385 | 1.3E-21 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 646 | 711 | 1.9E-5 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 511 | 578 | 8.0E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 129 | 389 | 7.8E-28 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 511 | 575 | 1.1E-6 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 643 | 709 | 0.016 | IPR014720 |
| SMART | SM00577 | forpap2 | 192 | 368 | 2.6E-12 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 381 | 17.014317 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 676 | 710 | 10.411697 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 510 | 576 | 12.645117 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 455 | - | - |
| Coils | Coil | Coil | 691 | 711 | - | - |
| Coils | Coil | Coil | 557 | 577 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_010923073.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Elaeis guineensis] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8K0I4J3 | protein-serine/threonine phosphatase OS=Cocos nucifera OX=13894 GN=COCNU_04G000320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology