HalophFGD

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Basic Information
Locus ID: COCNU_03G013130
Species & Taxonomic ID: Cocos nucifera & 13894
Genome Assembly: GCA_008124465.1
Short Name: GLT1
Description: glutamate synthase
Maps and Mapping Data
Chromosome Start End Strand ID
chr3 70771596 70793623 + COCNU_03G013130
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.07 232,104.36 Da 34.06 87.96 -0.22
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00982 gltB_C 1077 1325 1.31116E-150 IPR002489
CDD cd02808 GltS_FMN 704 1029 1.27675E-116 IPR002932
Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1415 1524 2.3E-20 IPR028261
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1537 1829 7.2E-19 IPR023753
Pfam PF01493 GXGXG motif 1100 1286 9.0E-87 IPR002489
Pfam PF04898 Glutamate synthase central domain 347 635 4.6E-110 IPR006982
Pfam PF01645 Conserved region in glutamate synthase 852 1017 1.2E-67 IPR002932
Pfam PF00310 Glutamine amidotransferases class-II 23 81 1.0E-19 IPR017932
Pfam PF00310 Glutamine amidotransferases class-II 107 213 1.7E-44 IPR017932
SUPERFAMILY SSF81383 F-box domain 1836 1895 1.96E-10 IPR036047
SUPERFAMILY SSF69336 Alpha subunit of glutamate synthase, C-terminal domain 1068 1333 2.35E-98 IPR036485
SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 23 300 1.64E-81 IPR029055
SUPERFAMILY SSF51395 FMN-linked oxidoreductases 343 1050 8.9E-216 -
SUPERFAMILY SSF46548 alpha-helical ferredoxin 1390 1547 5.75E-33 -
SUPERFAMILY SSF51971 Nucleotide-binding domain 1535 1808 2.53E-59 -
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 214 309 1.9E-35 IPR029055
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 105 213 5.5E-46 IPR029055
Gene3D G3DSA:1.10.1060.10 - 1385 1536 4.3E-39 IPR009051
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 23 94 1.2E-22 IPR029055
Gene3D G3DSA:3.20.20.70 Aldolase class I 687 851 2.3E-63 IPR013785
Gene3D G3DSA:3.20.20.70 Aldolase class I 852 1032 2.2E-98 IPR013785
Gene3D G3DSA:3.50.50.60 - 1646 1807 4.0E-32 IPR036188
Gene3D G3DSA:2.160.20.60 - 1056 1331 1.9E-111 IPR036485
Gene3D G3DSA:3.20.20.70 Aldolase class I 330 686 1.7E-130 IPR013785
Gene3D G3DSA:3.40.50.720 - 1537 1645 4.4E-15 -
TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1392 1836 1.4E-195 IPR006005
PIRSF PIRSF000187 GOGAT 1 94 2.8E-31 IPR012220
PIRSF PIRSF000187 GOGAT 104 214 2.7E-52 IPR012220
PIRSF PIRSF000187 GOGAT 212 853 0.0 IPR012220
PIRSF PIRSF000187 GOGAT 849 1852 0.0 IPR012220
ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 23 274 20.142855 IPR017932
PRINTS PR00419 Adrenodoxin reductase family signature 1538 1560 2.4E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1561 1574 2.4E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1604 1614 2.4E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1682 1696 2.4E-22 -
Coils Coil Coil 715 735 - -
Gene Ontology
Biological Process:
GO:0006537 (glutamate biosynthetic process) GO:0008152 (metabolic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0005506 (iron ion binding) GO:0005515 (protein binding) GO:0010181 (FMN binding) GO:0015930 (glutamate synthase activity) GO:0016040 (glutamate synthase (NADH) activity) GO:0016491 (oxidoreductase activity) GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors) GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor) GO:0050660 (flavin adenine dinucleotide binding) GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
KO Term:
K00264 (glutamate synthase (NADH) [EC:1.4.1.14])
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00910 (Nitrogen metabolism) map00910 (Nitrogen metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Reaction:
R00093 (2 L-Glutamate + NAD+ <=> L-Glutamine + 2-Oxoglutarate + NADH + H+) R00114 (2 L-Glutamate + NADP+ <=> L-Glutamine + 2-Oxoglutarate + NADPH + H+) R00248 (L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G53460.1 NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase 0
RefSeq XP_029118902.1 LOW QUALITY PROTEIN: glutamate synthase 1 [NADH], chloroplastic-like [Elaeis guineensis] 0
Swiss-Prot Q9LV03 Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2 0
TrEMBL A0A8K0I417 glutamate synthase (NADH) OS=Cocos nucifera OX=13894 GN=COCNU_03G013130 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg13893, jg2196
Aizoaceae Mesembryanthemum crystallinum 1 gene_3295
Amaranthaceae Atriplex hortensis 1 Ah018647
Amaranthaceae Beta vulgaris 1 BVRB_3g052140
Amaranthaceae Salicornia bigelovii 2 Sbi_jg15107, Sbi_jg55939
Amaranthaceae Salicornia europaea 1 Seu_jg26420
Amaranthaceae Suaeda aralocaspica 1 GOSA_00020044
Amaranthaceae Suaeda glauca 5 Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ...
gene:ENSEOMG00000043885
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920
Anacardiaceae Pistacia vera 1 pistato.v30185180
Apiaceae Apium graveolens 2 Ag10G02525, AgUnG00467
Arecaceae Cocos nucifera 2 COCNU_03G013130, scaffold000561G000020
Arecaceae Phoenix dactylifera 2 gene-LOC103708325, gene-LOC103713334
Asparagaceae Asparagus officinalis 1 AsparagusV1_05.2833.V1.1
Asteraceae Flaveria trinervia 1 Ftri18G12439
Brassicaceae Arabidopsis thaliana 1 AT5G53460.1
Brassicaceae Eutrema salsugineum 1 Thhalv10012414m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp6g15593.v2.2
Brassicaceae Brassica nigra 1 BniB08g016600.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq09G1606
Casuarinaceae Casuarina glauca 1 Cgl09G1742
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno02g12650, gene.Cymno12g01560
Dunaliellaceae Dunaliella salina 1 Dusal.0052s00003.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate03g24920, gene.Thate09g14990
Nitrariaceae Nitraria sibirica 1 evm.TU.LG01.2897
Plantaginaceae Plantago ovata 1 Pov_00041146
Plumbaginaceae Limonium bicolor 2 Lb0G37740, Lb7G32942
Poaceae Echinochloa crus-galli 5 AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ...
gene-QOZ80_5AG0363860, gene-QOZ80_5BG0411960
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0280530.1
Poaceae Lolium multiflorum 2 gene-QYE76_054594, gene-QYE76_054602
Poaceae Oryza coarctata 4 Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130
Poaceae Oryza sativa 2 LOC_Os01g48960.1, LOC_Os05g48200.1
Poaceae Paspalum vaginatum 3 gene-BS78_03G233100, gene-BS78_03G236800 ...
gene-BS78_09G229900
Poaceae Puccinellia tenuiflora 1 Pt_Chr0602367
Poaceae Sporobolus alterniflorus 3 Chr02G012560, Chr03G013590, Chr08G013750
Poaceae Thinopyrum elongatum 1 Tel3E01G442300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG039670, gene_TRIDC3BG044820
Poaceae Triticum aestivum 3 TraesCS3A02G266300.1, TraesCS3B02G299800.1 ...
TraesCS3D02G266400.1
Poaceae Zea mays 3 Zm00001eb156610_P002, Zm00001eb295220_P001 ...
Zm00001eb360480_P005
Poaceae Zoysia japonica 2 nbis-gene-12580, nbis-gene-26118
Poaceae Zoysia macrostachya 2 Zma_g10886, Zma_g8437
Portulacaceae Portulaca oleracea 1 evm.TU.LG06.1967
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13790, gene.Posoc09g09130
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-3559, nbisL1-mrna-7507
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-2555, nbisL1-mrna-921
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14013, nbisL1-mrna-5641
Rhizophoraceae Kandelia candel 2 evm.TU.utg000009l.314, evm.TU.utg000012l.386
Rhizophoraceae Kandelia obovata 2 Maker00005974, Maker00011451
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-2744, nbisL1-mrna-8412
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-16769, nbisL1-mrna-743
Salicaceae Populus euphratica 3 populus_peu28067, populus_peu29502, populus_peu29503
Solanaceae Lycium barbarum 1 gene-LOC132632063
Solanaceae Solanum pennellii 1 gene-LOC107013700
Tamaricaceae Reaumuria soongarica 1 gene_5260
Tamaricaceae Tamarix chinensis 1 TC06G1506
Zosteraceae Zostera marina 2 Zosma01g06270.v3.1, Zosma01g22390.v3.1
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