Basic Information
Locus ID:
COCNU_03G011800
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 67435216 | 67438605 | - | COCNU_03G011800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 32,234.00 Da | 37.85 | 66.73 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 33 | 296 | 2.9E-89 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 187 | 288 | 7.85E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 183 | 300 | 3.3E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 187 | 289 | 27.602243 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.2 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | XP_010915883.1 | auxin-responsive protein IAA17 [Elaeis guineensis] | 0 |
| Q38826 | Auxin-responsive protein IAA8 OS=Arabidopsis thaliana OX=3702 GN=IAA8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I485 | Auxin-responsive protein OS=Cocos nucifera OX=13894 GN=COCNU_03G011800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology