Basic Information
Locus ID:
COCNU_03G010250
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 63469046 | 63470002 | - | COCNU_03G010250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 33,960.46 Da | 40.68 | 97.08 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 51 | 316 | 7.31567E-73 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 54 | 283 | 8.2E-56 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 30 | 299 | 6.48E-87 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 22 | 318 | 3.6E-104 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 236 | 248 | - | IPR033749 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 104 | 120 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 31 | 316 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 31 | 316 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_010916141.1 | geranylgeranyl pyrophosphate synthase 7, chloroplastic [Elaeis guineensis] | 0 |
| P34802 | Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0I3J7 | Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Cocos nucifera OX=13894 GN=COCNU_03G010250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology