Basic Information
Locus ID:
COCNU_03G010170
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 63264127 | 63280985 | - | COCNU_03G010170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 41,055.61 Da | 57.92 | 80.96 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 337 | 379 | 4.1939E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.36176E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 341 | 376 | 1.9E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 260 | 315 | 5.8E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 161 | 198 | 5.0E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.5E-19 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 324 | 383 | 6.32E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 144 | 204 | 1.09E-10 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 257 | 322 | 8.11E-21 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 2.99E-24 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 6.4E-30 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 251 | 315 | 9.8E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 153 | 203 | 3.2E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 333 | 380 | 1.1E-22 | - |
| SMART | SM00165 | uba_6 | 160 | 200 | 8.2E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.4E-23 | IPR000626 |
| SMART | SM00727 | CBM | 258 | 301 | 1.1E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 341 | 378 | 5.0E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 384 | 2.6E-115 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 158 | 201 | 12.836059 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 338 | 379 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 21.633068 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 382 | 1.4E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 351 | 1.4E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 286 | 308 | 1.4E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 366 | 1.4E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 137 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_008775144.1 | ubiquitin receptor RAD23d-like [Phoenix dactylifera] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0I369 | Ubiquitin receptor RAD23 OS=Cocos nucifera OX=13894 GN=COCNU_03G010170 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology