Basic Information
Locus ID:
COCNU_03G010040
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 62905715 | 62912763 | + | COCNU_03G010040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 47,569.23 Da | 60.07 | 76.29 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 326 | 363 | 1.26E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 324 | 363 | 2.5E-12 | - |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 333 | 362 | 9.416206 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 337 | 356 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 426 | - | - |
| Coils | Coil | Coil | 277 | 297 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010916149.1 | zinc finger protein VAR3, chloroplastic [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0MYV6 | Zinc finger protein VAR3, chloroplastic OS=Cocos nucifera OX=13894 GN=COCNU_03G010040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology