Basic Information
Locus ID:
COCNU_03G009990
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 62776663 | 62781326 | + | COCNU_03G009990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 62,256.58 Da | 48.88 | 67.55 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 289 | 313 | 2.0E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 368 | 394 | 9.4E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 333 | 356 | 6.3E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 328 | 361 | 2.98E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 286 | 314 | 2.82E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 362 | 396 | 3.49E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 396 | 8.1E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 283 | 317 | 1.0E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 325 | 361 | 2.5E-13 | - |
| SMART | SM00547 | zf_4 | 291 | 315 | 1.3E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 335 | 359 | 4.8E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 368 | 392 | 9.8E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 333 | 362 | 9.675926 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 289 | 318 | 9.687219 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 366 | 395 | 9.450083 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 337 | 356 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 293 | 312 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 370 | 389 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 455 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_010916201.1 | zinc finger protein VAR3, chloroplastic [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0I421 | Zinc finger protein VAR3, chloroplastic OS=Cocos nucifera OX=13894 GN=COCNU_03G009990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology