Basic Information
Locus ID:
COCNU_03G007820
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 56711928 | 56719950 | - | COCNU_03G007820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 30,932.44 Da | 57.44 | 69.48 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 4 | 262 | 3.7E-57 | IPR017066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| Coils | Coil | Coil | 154 | 195 | - | - |
| Coils | Coil | Coil | 94 | 116 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45976.1 | S-ribonuclease binding protein 1. | 0 |
| RefSeq | NP_001290526.1 | probable BOI-related E3 ubiquitin-protein ligase 2 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0MYM5 | Putative BOI-related E3 ubiquitin-protein ligase 2 OS=Cocos nucifera OX=13894 GN=COCNU_03G007820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10666, jg6246 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00356 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G006760, COCNU_03G007820, scaffold001973G000010 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103698873, gene-LOC103701819, gene-LOC103722891 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1951.V1.1, AsparagusV1_07.2863.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G11986, Ftri2G13464 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G45976.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011662m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB04g063880.2N, BniB06g023710.2N, BniB07g009720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1824 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1965 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g02070, gene.Cymno02g02080 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate07g05040, gene.Thate08g03810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5198 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.417 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027603 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20831 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4257, BH01.4561, CH01.4867 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0242080, gene-QOZ80_3BG0286050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0389860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069123 |
| Poaceae | Oryza coarctata | 2 | Oco05G008900, Oco06G009270 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g15730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G408300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102175, Pt_Chr0102196 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G030420, Chr04G007240, Chr07G004400, Chr12G009180 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G376600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG012200, gene_TRIDC4BG038230 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G089200.1, TraesCS4B02G215100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb011620_P001, Zm00001eb398070_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2159, nbis-gene-3817, nbis-gene-55954 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1578, Zma_g3974 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g30720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.743 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19177 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20071 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6601 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.598 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010624 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8256 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10008 |
| Salicaceae | Populus euphratica | 1 | populus_peu31993 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627847 |
| Solanaceae | Solanum chilense | 1 | SOLCI007408100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018326 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30927_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2539 |
| Zosteraceae | Zostera marina | 1 | Zosma01g15290.v3.1 |