Basic Information
Locus ID:
COCNU_03G007440
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 55548005 | 55553287 | - | COCNU_03G007440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 38,014.70 Da | 43.11 | 76.30 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 99 | 326 | 2.38E-21 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 333 | 1.1E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 206 | 245 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 203 | 0.057 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 213 | 254 | 8.971213 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 73 | - | - |
| Coils | Coil | Coil | 31 | 58 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008795179.1 | SEC12-like protein 2 isoform X2 [Phoenix dactylifera] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A8K0I3I9 | SEC12-like protein 2 OS=Cocos nucifera OX=13894 GN=COCNU_03G007440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology