Basic Information
Locus ID:
COCNU_03G007200
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 54742781 | 54744418 | + | COCNU_03G007200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 40,684.33 Da | 55.42 | 80.45 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 156 | 198 | 9.72517E-17 | - |
| Pfam | PF13639 | Ring finger domain | 156 | 198 | 2.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 204 | 3.79E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 203 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 6.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.887609 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 252 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10380.1 | RING/U-box superfamily protein. Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. | 0 |
| RefSeq | XP_010916700.1 | RING-H2 finger protein ATL52 [Elaeis guineensis] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MZ43 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_03G007200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | COCNU_03G007200, COCNU_05G005430, COCNU_13G003440 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696979, gene-LOC103718737, gene-LOC120103675 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1871.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16610 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.2251, BH03.2154 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538300, gene-QOZ80_6BG0491520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0488010.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005854, gene-QYE76_005871 |
| Poaceae | Oryza coarctata | 2 | Oco17G007050, Oco18G007260 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g29370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G211000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701786, Pt_Chr0701822 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G008210, Chr13G009530, Chr14G015580, Chr21G014630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G397500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG038830, gene_TRIDC5BG040980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G248300.1.cds1, TraesCS5B02G246000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb101200_P001, Zm00001eb315620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30560 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30479 |