Basic Information
Locus ID:
COCNU_03G006410
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger, C3HC4 type family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 52363915 | 52371372 | + | COCNU_03G006410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 11,682.19 Da | 49.33 | 78.11 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 37 | 73 | 3.37046E-15 | - |
| Pfam | PF12906 | RING-variant domain | 37 | 71 | 1.2E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 74 | 1.62E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 88 | 3.7E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 36 | 76 | 8.7E-10 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 29 | 95 | 15.902242 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010916939.1 | uncharacterized protein LOC105041660 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0I2A4 | Putative E3 ubiquitin-protein ligase march1 OS=Cocos nucifera OX=13894 GN=COCNU_03G006410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology