Basic Information
Locus ID:
COCNU_03G005820
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 50390234 | 50404343 | + | COCNU_03G005820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.88 | 41,584.05 Da | 48.83 | 58.18 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 196 | 260 | 7.53738E-20 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 196 | 262 | 2.1E-11 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 188 | 266 | 1.57E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 32 | 113 | 1.57E-13 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 179 | 270 | 4.1E-18 | IPR036910 |
| SMART | SM00398 | hmgende2 | 195 | 264 | 2.5E-14 | IPR009071 |
| SMART | SM00501 | bright_3 | 39 | 105 | 6.4E-4 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 196 | 263 | 15.064134 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 197 | - | - |
| Coils | Coil | Coil | 245 | 265 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010917043.1 | high mobility group B protein 9 [Elaeis guineensis] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I2E9 | Putative High mobility group B protein 9 OS=Cocos nucifera OX=13894 GN=COCNU_03G005820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology