halophFGD

Basic Information

Locus ID: COCNU_03G005420

Species & Taxonomic ID: Cocos nucifera & 13894

Genome Assembly: GCA_008124465.1

Description: Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	49303153	49322822	-	COCNU_03G005420

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.24	57,076.54 Da	40.14	114.41	0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01699	Sodium/calcium exchanger protein	85	240	2.8E-21	IPR004837
Pfam	PF01699	Sodium/calcium exchanger protein	395	492	9.9E-13	IPR004837
Pfam	PF01699	Sodium/calcium exchanger protein	277	392	2.0E-17	IPR004837
Gene3D	G3DSA:1.20.1420.30	-	114	253	1.8E-16	IPR044880
Gene3D	G3DSA:1.20.1420.30	-	263	396	7.6E-11	IPR044880
Gene3D	G3DSA:1.20.1420.30	-	397	506	6.3E-10	IPR044880
TIGRFAM	TIGR00378	cax: calcium/proton exchanger	66	391	5.6E-96	IPR004798
TIGRFAM	TIGR00846	caca2: calcium/proton exchanger	50	393	1.9E-109	-

Gene Ontology

Biological Process:

GO:0006816 (calcium ion transport) GO:0055085 (transmembrane transport)

Molecular Function:

GO:0015369 (calcium:proton antiporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K07300 (Ca2+:H+ antiporter)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G13320.1	cation exchanger 2. low affinity calcium antiporter CAX2
RefSeq	XP_010917335.1	vacuolar cation/proton exchanger 3 [Elaeis guineensis]
Swiss-Prot	Q6K1C4	Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX3 PE=2 SV=2
TrEMBL	A0A8K0MYC9	Vacuolar cation/proton exchanger OS=Cocos nucifera OX=13894 GN=COCNU_03G005420 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13278, jg19223, jg21257, jg25130
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9562
Amaranthaceae	Atriplex hortensis	1	Ah016061
Amaranthaceae	Beta vulgaris	1	BVRB_8g189090
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25760, Sbi_jg9588
Amaranthaceae	Salicornia europaea	2	Seu_jg19052, Seu_jg24539
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00020482
Amaranthaceae	Suaeda glauca	3	Sgl43967, Sgl48661, Sgl48731
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009836, gene:ENSEOMG00000032044 ... gene:ENSEOMG00000044280
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.8AG0010400, CQ.Regalona.r1.8BG0012930 ... CQ.Regalona.r1.9AG0009180
Anacardiaceae	Pistacia vera	2	pistato.v30016680, pistato.v30151410
Apiaceae	Apium graveolens	2	Ag3G02463, Ag9G01022
Arecaceae	Cocos nucifera	3	COCNU_03G005420, COCNU_05G007830, COCNU_08G003110
Arecaceae	Phoenix dactylifera	5	gene-LOC103702701, gene-LOC103712230, gene-LOC103714488 ... gene-LOC103719208, gene-LOC120112355
Asparagaceae	Asparagus officinalis	2	AsparagusV1_06.308.V1.1, AsparagusV1_08.2708.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G12227, Ftri4G04524, Ftri4G23314
Brassicaceae	Arabidopsis thaliana	3	AT1G55720.1, AT1G55730.1, AT3G13320.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011487m.g.v1.0, Thhalv10020742m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g41310.v2.2, Sp3g11520.v2.2
Brassicaceae	Brassica nigra	5	BniB01g051900.2N, BniB06g025700.2N, BniB07g000720.2N ... BniB07g026880.2N, BniB07g055670.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1554, Ceq02G2936, Ceq02G2949
Casuarinaceae	Casuarina glauca	3	Cgl01G1716, Cgl02G3054, Cgl02G3062
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g10480, gene.Cymno04g08770, gene.Cymno04g11230 ... gene.Cymno09g01860
Dunaliellaceae	Dunaliella salina	2	Dusal.0026s00008.v1.0, Dusal.0638s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g10460, gene.Thate05g05380
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1493
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.2323, evm.TU.LG05.2106
Plantaginaceae	Plantago ovata	1	Pov_00018406
Plumbaginaceae	Limonium bicolor	1	Lb3G18229
Poaceae	Echinochloa crus-galli	8	AH01.3390, AH09.2539, BH01.3676, BH07.439, BH09.2772 ... CH01.3980, CH03.4486, CH09.2971
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1BG0062870, gene-QOZ80_2AG0101230 ... gene-QOZ80_3AG0251280, gene-QOZ80_3BG0277080, gene-QOZ80_4AG0301260, gene-QOZ80_4BG0331990
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0203400.1, HORVU.MOREX.r3.4HG0367770.1 ... HORVU.MOREX.r3.6HG0556990.1
Poaceae	Lolium multiflorum	2	gene-QYE76_020235, gene-QYE76_046813
Poaceae	Oryza coarctata	5	Oco04G002020, Oco05G015330, Oco06G015830, Oco07G017760 ... Oco08G017170
Poaceae	Oryza sativa	3	LOC_Os02g04630.1, LOC_Os03g27960.1, LOC_Os04g55940.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G336500, gene-BS78_04G034200 ... gene-BS78_06G263600
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0105194, Pt_Chr0202724, Pt_Chr0207648, Pt_Chr0300593 ... Pt_Chr0300624
Poaceae	Sporobolus alterniflorus	8	Chr01G024660, Chr04G012930, Chr07G012390, Chr0G012070 ... Chr23G002220, Chr25G001730, Chr26G017150, Chr30G001770
Poaceae	Thinopyrum elongatum	4	Tel2E01G859200, Tel2E01G859300, Tel4E01G275300 ... Tel6E01G241000
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG071280, gene_TRIDC2BG077120 ... gene_TRIDC4AG023850, gene_TRIDC4BG026880, gene_TRIDC6AG014150, gene_TRIDC6BG019630
Poaceae	Triticum aestivum	9	TraesCS2A02G506200.1, TraesCS2B02G534600.1 ... TraesCS2D02G507000.1, TraesCS4A02G156500.1, TraesCS4B02G161500.2, TraesCS4D02G156900.2, TraesCS6A02G108700.1, TraesCS6B02G137200.1, TraesCS6D02G096900.1
Poaceae	Zea mays	5	Zm00001eb019340_P004, Zm00001eb067920_P001 ... Zm00001eb231990_P001, Zm00001eb392740_P001, Zm00001eb432390_P001
Poaceae	Zoysia japonica	2	nbis-gene-12063, nbis-gene-29981
Poaceae	Zoysia macrostachya	3	Zma_g1057, Zma_g14932, Zma_g20576
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.2614, evm.TU.LG08.195
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g21010, gene.Posoc01g26210, gene.Posoc02g26080 ... gene.Posoc08g03140
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_5_RagTag.1669, evm.TU.Scaffold_7_RagTag.1529 ... evm.TU.Scaffold_7_RagTag.27, evm.TU.Scaffold_8_RagTag.1675
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10022, nbisL1-mrna-12167, nbisL1-mrna-19733 ... nbisL1-mrna-19949, nbisL1-mrna-8565, nbisL1-mrna-8617
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-20816, nbisL1-mrna-3337, nbisL1-mrna-3396
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10858, nbisL1-mrna-13461, nbisL1-mrna-15026
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.164, evm.TU.utg000006l.960 ... evm.TU.utg000018l.14, evm.TU.utg000018l.815, evm.TU.utg000028l.14
Rhizophoraceae	Kandelia obovata	5	Maker00002990, Maker00003841, Maker00010692, Maker00011753 ... Maker00013354
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10492, nbisL1-mrna-14950, nbisL1-mrna-3185 ... nbisL1-mrna-7970, nbisL1-mrna-9355
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11336, nbisL1-mrna-12221, nbisL1-mrna-15598 ... nbisL1-mrna-22554
Salicaceae	Populus euphratica	3	populus_peu00033, populus_peu17107, populus_peu19860
Solanaceae	Lycium barbarum	4	gene-LOC132603774, gene-LOC132618326, gene-LOC132633573 ... gene-LOC132636551
Solanaceae	Solanum chilense	4	SOLCI002832800, SOLCI003663800, SOLCI004800600 ... SOLCI006857800
Solanaceae	Solanum pennellii	4	gene-LOC107005957, gene-LOC107007695, gene-LOC107012278 ... gene-LOC107024290
Tamaricaceae	Reaumuria soongarica	2	gene_12674, gene_13054
Tamaricaceae	Tamarix chinensis	2	TC05G0905, TC05G2535
Zosteraceae	Zostera marina	5	Zosma01g10160.v3.1, Zosma02g20240.v3.1, Zosma03g36320.v3.1 ... Zosma05g21890.v3.1, Zosma05g21910.v3.1