Basic Information
Locus ID:
COCNU_03G003470
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 39067042 | 39078913 | + | COCNU_03G003470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 35,392.33 Da | 46.16 | 72.85 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 59 | 96 | 1.1603E-12 | - |
| Pfam | PF03145 | Seven in absentia protein family | 103 | 301 | 5.4E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 114 | 305 | 1.18E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 148 | 6.6E-9 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 188 | 302 | 2.8E-36 | IPR008974 |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 149 | 174 | 3.3E-8 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 97 | 9.00757 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 114 | 174 | 14.356163 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_010917255.1 | E3 ubiquitin-protein ligase SINAT2 isoform X1 [Elaeis guineensis] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MY61 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_03G003470 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology