Basic Information
Locus ID:
COCNU_03G003130
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
CMPG1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 36530474 | 36531799 | + | COCNU_03G003130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 48,344.67 Da | 42.22 | 98.82 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 76 | 6.08504E-25 | - |
| Pfam | PF04564 | U-box domain | 32 | 102 | 8.6E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 105 | 5.74E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 141 | 418 | 1.94E-19 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 104 | 1.6E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 120 | 419 | 3.2E-18 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 34 | 97 | 1.3E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 104 | 38.268265 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_010906325.1 | U-box domain-containing protein 21-like [Elaeis guineensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0I2B0 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_03G003130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology