Basic Information
Locus ID:
COCNU_03G001870
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase ATL23-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 15285302 | 15285637 | + | COCNU_03G001870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 11,909.47 Da | 87.28 | 67.03 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 48 | 91 | 2.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 98 | 5.05E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 97 | 6.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 49 | 90 | 3.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 91 | 12.518784 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_010918198.1 | E3 ubiquitin-protein ligase ATL23 [Elaeis guineensis] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0I1M6 | E3 ubiquitin-protein ligase ATL23 OS=Cocos nucifera OX=13894 GN=COCNU_03G001870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology