Basic Information
Locus ID:
COCNU_03G001520
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9964932 | 9981263 | - | COCNU_03G001520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 360,455.53 Da | 43.94 | 93.89 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01201 | PH_BEACH | 2414 | 2579 | 9.26636E-28 | IPR023362 |
| CDD | cd06071 | Beach | 2615 | 2894 | 3.44679E-151 | IPR000409 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3025 | 3058 | 0.0027 | IPR001680 |
| Pfam | PF02138 | Beige/BEACH domain | 2615 | 2894 | 1.7E-117 | IPR000409 |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 2526 | 2576 | 5.1E-8 | IPR023362 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2978 | 3007 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50729 | PH domain-like | 2414 | 2580 | 5.66E-17 | - |
| SUPERFAMILY | SSF81837 | BEACH domain | 2606 | 2894 | 1.83E-121 | IPR036372 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2948 | 3226 | 3.33E-29 | IPR036322 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 724 | 910 | 3.73E-10 | IPR013320 |
| SUPERFAMILY | SSF48371 | ARM repeat | 167 | 471 | 9.87E-8 | IPR016024 |
| Gene3D | G3DSA:2.30.29.30 | - | 2415 | 2576 | 4.7E-8 | IPR011993 |
| Gene3D | G3DSA:2.130.10.10 | - | 2978 | 3231 | 1.6E-25 | IPR015943 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2604 | 2894 | 4.0E-136 | IPR036372 |
| Gene3D | G3DSA:1.25.10.10 | - | 152 | 537 | 5.4E-7 | IPR011989 |
| Gene3D | G3DSA:2.60.120.200 | - | 742 | 870 | 4.8E-7 | - |
| SMART | SM00320 | WD40_4 | 3110 | 3148 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3019 | 3058 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3180 | 3219 | 0.79 | IPR001680 |
| SMART | SM01026 | Beach_2 | 2614 | 2894 | 1.2E-202 | IPR000409 |
| SMART | SM00320 | WD40_4 | 2967 | 3008 | 0.023 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3026 | 3061 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2602 | 2894 | 136.131866 | IPR000409 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 2411 | 2577 | 30.036367 | IPR023362 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3026 | 3061 | 9.54651 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 3045 | 3059 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1669 | 1706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2368 | 2396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1590 | 1611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1689 | 1706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1595 | 1611 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03060.1 | Beige/BEACH domain ;WD domain, G-beta repeat protein. Encodes a WD/BEACH domain protein involved in cell morphogenesis. | 0 |
| RefSeq | XP_010917623.1 | protein SPIRRIG isoform X1 [Elaeis guineensis] | 0 |
| F4HZB2 | Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MXZ4 | Protein SPIRRIG OS=Cocos nucifera OX=13894 GN=COCNU_03G001520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg35353, jg37846, jg37847, jg8753 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13532 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000300, Ah000308, Ah000311 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g120020, BVRB_5g120070 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg31613, Sbi_jg31614, Sbi_jg31620, Sbi_jg57659 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25335, Seu_jg25338 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00025834, GOSA_00025839 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54271, Sgl54274, Sgl59610, Sgl59613 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005857, gene:ENSEOMG00000021099 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0025350, CQ.Regalona.r1.5BG0026880 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30026580, pistato.v30034790 |
| Apiaceae | Apium graveolens | 1 | Ag9G02107 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G001520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723915 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1927.V1.1, AsparagusV1_08.1928.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G26736, Ftri15G17043 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03060.1, AT4G02660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006519m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02060.v2.2, Sp6g02580.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g001080.2N, BniB03g038490.2N, BniB08g039630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2063 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2178 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01080 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g28170, gene.Thate08g10760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2608 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1143 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007941, Pov_00007942, Pov_00034934 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28947 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.780, CH01.773, Contig309.117 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216630, gene-QOZ80_3BG0261900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0509920.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G023310, Oco06G024200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G084400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107118 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G005510, Chr04G028420, Chr07G027370, Chr09G009540 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G612000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056030, gene_TRIDC5BG060060 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G383300.1, TraesCS5B02G387800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb056940_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16119 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2818 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.2847, evm.TU.LG02.1123, evm.TU.LG02.1126 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g02270, gene.Posoc07g10210 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60381.2, evm.TU.60382.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11316, nbisL1-mrna-21258 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10698 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10353 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.334 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014130 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1488, nbisL1-mrna-9953 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19742, nbisL1-mrna-5109 |
| Salicaceae | Populus euphratica | 5 | populus_peu15098, populus_peu15099, populus_peu15100 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610773 |
| Solanaceae | Solanum chilense | 1 | SOLCI005213800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031012 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16417 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2621 |
| Zosteraceae | Zostera marina | 6 | Zosma02g18550.v3.1, Zosma04g00330.v3.1, Zosma04g00340.v3.1 ... |