Basic Information
Locus ID:
COCNU_03G001150
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
acetyltransferase component of pyruvate dehydrogenase complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6240248 | 6240868 | - | COCNU_03G001150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 21,844.68 Da | 42.31 | 79.17 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06849 | lipoyl_domain | 2 | 64 | 5.44549E-18 | - |
| Pfam | PF02817 | e3 binding domain | 141 | 175 | 5.1E-7 | IPR004167 |
| Pfam | PF00364 | Biotin-requiring enzyme | 2 | 62 | 6.8E-12 | IPR000089 |
| SUPERFAMILY | SSF47005 | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 134 | 179 | 9.81E-7 | IPR036625 |
| SUPERFAMILY | SSF51230 | Single hybrid motif | 2 | 80 | 1.57E-16 | IPR011053 |
| Gene3D | G3DSA:2.40.50.100 | - | 1 | 89 | 4.7E-18 | - |
| Gene3D | G3DSA:4.10.320.10 | - | 141 | 178 | 7.0E-9 | IPR036625 |
| ProSiteProfiles | PS50968 | Biotinyl/lipoyl domain profile. | 1 | 68 | 22.540154 | IPR000089 |
| ProSiteProfiles | PS51826 | Peripheral subunit-binding (PSBD) domain profile. | 141 | 178 | 12.837736 | IPR004167 |
| ProSitePatterns | PS00189 | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 15 | 44 | - | IPR003016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 113 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00020 (Citrate cycle (TCA cycle))
map00020 (Citrate cycle (TCA cycle))
ko00620 (Pyruvate metabolism)
map00620 (Pyruvate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34430.1 | 2-oxoacid dehydrogenases acyltransferase family protein. | 0 |
| RefSeq | XP_008781631.2 | dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Phoenix dactylifera] | 0 |
| Q9C8P0 | Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB3003 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0I251 | Putative Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic OS=Cocos nucifera OX=13894 GN=COCNU_03G001150 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000013134 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G001150, COCNU_14G007100 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1284.V1.1, AsparagusV1_05.1496.V1.1 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g01930 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01234, Lb2G15417 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G017130 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG020310 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.1169 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26499 |