Basic Information
Locus ID:
COCNU_03G001100
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5977954 | 5998880 | + | COCNU_03G001100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 46,030.05 Da | 44.03 | 91.56 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 180 | 2.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 234 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 60 | 89 | 0.023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 23 | 248 | 1.43E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 255 | 2.9E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 22 | 145 | 6.3E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 190 | 234 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 90 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 93 | 129 | 330.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 198 | 243 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 58 | 89 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 58 | 89 | 9.599237 | - |
| Hamap | MF_03056 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. | 28 | 420 | 22.949032 | IPR028884 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03110.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010917762.1 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 isoform X1 [Elaeis guineensis] | 0 |
| Q54UI3 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 OS=Dictyostelium discoideum OX=44689 GN=wdr4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0I1U1 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit OS=Cocos nucifera OX=13894 GN=COCNU_03G001100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35317, jg8780 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19403 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000362 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30737, Sbi_jg58524 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28397 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004963 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55006, Sgl60265 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007408, gene:ENSEOMG00000022237 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024930, CQ.Regalona.r1.5BG0026410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30026950 |
| Apiaceae | Apium graveolens | 1 | Ag9G02133 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G001100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718085 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1891.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G30253 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G03110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007706m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g02120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g000350.2N, BniB06g047620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2210 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0647s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g40370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6309, nbisL1-mrna-9669 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1096 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008028, Pov_00036794 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00569 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.757, CH01.752, Contig309.104 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0216400, gene-QOZ80_3BG0261680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0510120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061921 |
| Poaceae | Oryza coarctata | 2 | Oco05G023430, Oco06G024320 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G083100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107129 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005400, Chr04G028450, Chr07G027420, Chr12G037770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G613000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056320, gene_TRIDC5BG060320 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G384800.1, TraesCS5B02G389600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb215000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16130 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2810 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2338, evm.TU.LG14.1507 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g01750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1003 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11344 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5060 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11616 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.315 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013017 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9975 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7623 |
| Salicaceae | Populus euphratica | 1 | populus_peu15061 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605630 |
| Solanaceae | Solanum chilense | 1 | SOLCI002493800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022043 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2256_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0842 |
| Zosteraceae | Zostera marina | 1 | Zosma06g26360.v3.1 |