Basic Information
Locus ID:
COCNU_03G000910
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4908006 | 4927058 | - | COCNU_03G000910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 198,888.41 Da | 47.41 | 66.48 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 1374 | 1434 | 4.27618E-4 | - |
| CDD | cd15532 | PHD2_CHD_II | 1179 | 1218 | 9.85995E-18 | - |
| Pfam | PF16135 | Tify domain binding domain | 1100 | 1150 | 5.2E-17 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1366 | 1439 | 2.32E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1169 | 1223 | 1.06E-12 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 1350 | 1466 | 4.0E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1168 | 1234 | 7.4E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1178 | 1219 | 4.6E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1220 | 1279 | 14.0 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1176 | 1221 | 9.997299 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1334 | 1471 | 9.784289 | IPR000182 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 868 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 844 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 868 | - | - |
| Coils | Coil | Coil | 76 | 96 | - | - |
| Coils | Coil | Coil | 488 | 515 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010917733.1 | uncharacterized protein LOC105042291 [Elaeis guineensis] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MXP3 | J domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_03G000910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology