Basic Information
Locus ID:
COCNU_03G000270
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1344975 | 1364701 | - | COCNU_03G000270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 119,273.26 Da | 42.53 | 79.03 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 189 | 478 | 3.92836E-140 | - |
| CDD | cd00121 | MATH | 48 | 171 | 1.11132E-39 | IPR002083 |
| Pfam | PF00917 | MATH domain | 53 | 173 | 2.2E-20 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 577 | 829 | 1.9E-77 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 839 | 1006 | 1.0E-46 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 191 | 473 | 2.1E-45 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 44 | 178 | 2.29E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 186 | 503 | 3.14E-82 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 755 | 852 | 1.5E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 45 | 187 | 6.0E-53 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 188 | 477 | 3.0E-70 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 637 | 754 | 3.7E-46 | - |
| SMART | SM00061 | math_3 | 48 | 152 | 2.2E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 191 | 476 | 30.103794 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 46 | 171 | 39.210091 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 392 | 409 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 192 | 207 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| Coils | Coil | Coil | 492 | 512 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_019704894.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Elaeis guineensis] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I1E6 | ubiquitinyl hydrolase 1 OS=Cocos nucifera OX=13894 GN=COCNU_03G000270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology