Basic Information
Locus ID:
COCNU_03G000180
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Nuclear pore complex protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 737834 | 760077 | + | COCNU_03G000180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 141,332.59 Da | 63.63 | 59.45 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1321 | 1374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1321 | 1338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 703 | - | - |
| Coils | Coil | Coil | 184 | 204 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10650.1 | 0 | |
| RefSeq | XP_019704858.1 | nuclear pore complex protein NUP1 isoform X1 [Elaeis guineensis] | 0 |
| Q9CAF4 | Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MY09 | Nuclear pore complex protein NUP1 OS=Cocos nucifera OX=13894 GN=COCNU_03G000180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14383, jg2849 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9551 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016086 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40848, Sbi_jg50808 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2357 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020527 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43911, Sgl48677 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009719, gene:ENSEOMG00000032791 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0010350, CQ.Regalona.r1.8BG0012910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30169200 |
| Apiaceae | Apium graveolens | 1 | Ag2G00789 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G000180, scaffold000958G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707572, gene-LOC103721995, gene-LOC103724243 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_03.419.V1.1, AsparagusV1_03.420.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri6G14067, Ftri8G09474, Ftri8G21862, Ftri8G31849 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G10650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019905m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g08960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g024890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1619 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1658 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g14100, gene.Cymno17g01940 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g29390, gene.Thate02g39660 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.Contig6.14, evm.TU.Contig6.15 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040135 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37982, Lb3G18468, Lb3G18469, Lb3G18470 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.146, BH03.3889, CH01.459 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213260, gene-QOZ80_3BG0258400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0517130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061394 |
| Poaceae | Oryza coarctata | 2 | Oco05G025580, Oco06G026430 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57425.1, LOC_Os03g57430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G056200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105299, Pt_Chr0105315 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G003240, Chr04G022950, Chr04G030170, Chr12G035140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G668000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG061690, gene_TRIDC5BG065730 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G426400.1, TraesCS5B02G428300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb060090_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15293, nbis-gene-16421 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2611, Zma_g330 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2577, evm.TU.LG08.45 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g00210, gene.Posoc07g09020 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1079, evm.TU.Scaffold_2_RagTag.1225 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3882, nbisL1-mrna-6529 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12585, nbisL1-mrna-17287, nbisL1-mrna-17288 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18773, nbisL1-mrna-21129 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.486, evm.TU.utg000016l.864 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005684, Maker00017240 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11048, nbisL1-mrna-12389 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13286, nbisL1-mrna-13287, nbisL1-mrna-5499 |
| Salicaceae | Populus euphratica | 4 | populus_peu06042, populus_peu06046, populus_peu19904 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615523, gene-LOC132640123 |
| Solanaceae | Solanum chilense | 3 | SOLCI001503300, SOLCI002249400, SOLCI002249600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004611, gene-LOC107020489 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17173_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0967 |
| Zosteraceae | Zostera marina | 2 | Zosma05g33260.v3.1, Zosma06g30540.v3.1 |