Basic Information
Locus ID:
COCNU_03G000080
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Seven in absentia protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 291100 | 292215 | + | COCNU_03G000080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 22,150.29 Da | 50.84 | 82.85 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 59 | 97 | 3.44746E-11 | - |
| Pfam | PF03145 | Seven in absentia protein family | 128 | 193 | 4.4E-19 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 75 | 197 | 2.48E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 101 | 1.9E-6 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 102 | 193 | 2.2E-17 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 97 | 10.128798 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_010917908.1 | E3 ubiquitin-protein ligase DIS1 [Elaeis guineensis] | 0 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0I1P8 | RING-type domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_03G000080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000080 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.698.V1.1, AsparagusV1_06.763.V1.1 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g09170 |