Basic Information
Locus ID:
COCNU_02G019540
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
USP
Description:
UDP-sugar pyrophosphorylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 84170569 | 84204502 | + | COCNU_02G019540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 130,096.90 Da | 40.81 | 91.88 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06424 | UGGPase | 39 | 397 | 0.0 | - |
| CDD | cd18787 | SF2_C_DEAD | 1008 | 1138 | 1.85158E-58 | - |
| CDD | cd17939 | DEADc_EIF4A | 799 | 997 | 3.72956E-130 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 820 | 981 | 6.1E-40 | IPR011545 |
| Pfam | PF01704 | UTP--glucose-1-phosphate uridylyltransferase | 133 | 229 | 1.1E-11 | IPR002618 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 603 | 744 | 5.1E-34 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1021 | 1129 | 3.4E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 574 | 747 | 1.96E-50 | IPR027417 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 17 | 539 | 1.22E-90 | IPR029044 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 864 | 1149 | 1.5E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1004 | 1168 | 3.3E-57 | IPR027417 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 4 | 414 | 2.0E-127 | IPR029044 |
| Gene3D | G3DSA:3.40.50.300 | - | 785 | 1003 | 5.1E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 570 | 752 | 5.9E-53 | IPR027417 |
| Gene3D | G3DSA:2.160.10.30 | - | 463 | 550 | 1.4E-13 | - |
| SMART | SM00487 | ultradead3 | 597 | 778 | 1.6E-38 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1048 | 1129 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 814 | 1011 | 6.1E-58 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 795 | 823 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 578 | 606 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 609 | 760 | 22.323107 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 826 | 996 | 29.811401 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1007 | 1168 | 25.845482 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 942 | 950 | - | IPR000629 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 725 | 733 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Pathway:
ko00040 (Pentose and glucuronate interconversions)
map00040 (Pentose and glucuronate interconversions)
ko00052 (Galactose metabolism)
map00052 (Galactose metabolism)
ko00053 (Ascorbate and aldarate metabolism)
map00053 (Ascorbate and aldarate metabolism)
ko00520 (Amino sugar and nucleotide sugar metabolism)
map00520 (Amino sugar and nucleotide sugar metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
Reaction:
R00289 (UTP + D-Glucose 1-phosphate <=> Diphosphate + UDP-glucose)
R00502 (UTP + alpha-D-Galactose 1-phosphate <=> Diphosphate + UDP-alpha-D-galactose)
R01381 (UTP + D-Glucuronate 1-phosphate <=> Diphosphate + UDP-glucuronate)
R03077 (UTP + beta-L-Arabinose 1-phosphate <=> Diphosphate + UDP-L-arabinose)
R08845 (UTP + alpha-D-Aldose 1-phosphate <=> Diphosphate + UDP-sugar)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_028074210.1 | eukaryotic initiation factor 4A-15-like isoform X3 [Camellia sinensis] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MXS4 | Putative Eukaryotic initiation factor 4A-2 OS=Cocos nucifera OX=13894 GN=COCNU_02G019540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology