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Basic Information
Locus ID: COCNU_02G019540
Species & Taxonomic ID: Cocos nucifera & 13894
Genome Assembly: GCA_008124465.1
Short Name: USP
Description: UDP-sugar pyrophosphorylase
Maps and Mapping Data
Chromosome Start End Strand ID
chr2 84170569 84204502 + COCNU_02G019540
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.90 130,096.90 Da 40.81 91.88 -0.12
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd06424 UGGPase 39 397 0.0 -
CDD cd18787 SF2_C_DEAD 1008 1138 1.85158E-58 -
CDD cd17939 DEADc_EIF4A 799 997 3.72956E-130 -
Pfam PF00270 DEAD/DEAH box helicase 820 981 6.1E-40 IPR011545
Pfam PF01704 UTP--glucose-1-phosphate uridylyltransferase 133 229 1.1E-11 IPR002618
Pfam PF00270 DEAD/DEAH box helicase 603 744 5.1E-34 IPR011545
Pfam PF00271 Helicase conserved C-terminal domain 1021 1129 3.4E-28 IPR001650
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 574 747 1.96E-50 IPR027417
SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases 17 539 1.22E-90 IPR029044
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 864 1149 1.5E-73 IPR027417
Gene3D G3DSA:3.40.50.300 - 1004 1168 3.3E-57 IPR027417
Gene3D G3DSA:3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 4 414 2.0E-127 IPR029044
Gene3D G3DSA:3.40.50.300 - 785 1003 5.1E-66 IPR027417
Gene3D G3DSA:3.40.50.300 - 570 752 5.9E-53 IPR027417
Gene3D G3DSA:2.160.10.30 - 463 550 1.4E-13 -
SMART SM00487 ultradead3 597 778 1.6E-38 IPR014001
SMART SM00490 helicmild6 1048 1129 1.5E-31 IPR001650
SMART SM00487 ultradead3 814 1011 6.1E-58 IPR014001
ProSiteProfiles PS51195 DEAD-box RNA helicase Q motif profile. 795 823 10.40907 IPR014014
ProSiteProfiles PS51195 DEAD-box RNA helicase Q motif profile. 578 606 10.40907 IPR014014
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 609 760 22.323107 IPR014001
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 826 996 29.811401 IPR014001
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. 1007 1168 25.845482 IPR001650
ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 942 950 - IPR000629
ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 725 733 - IPR000629
Gene Ontology
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0003724 (RNA helicase activity) GO:0005524 (ATP binding) GO:0070569 (uridylyltransferase activity)
KEGG Pathway
KO Term:
K12447 (UDP-sugar pyrophosphorylase [EC:2.7.7.64])
Pathway:
ko00040 (Pentose and glucuronate interconversions) map00040 (Pentose and glucuronate interconversions) ko00052 (Galactose metabolism) map00052 (Galactose metabolism) ko00053 (Ascorbate and aldarate metabolism) map00053 (Ascorbate and aldarate metabolism) ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)
Module:
M00014 (Glucuronate pathway (uronate pathway))
Reaction:
R00289 (UTP + D-Glucose 1-phosphate <=> Diphosphate + UDP-glucose) R00502 (UTP + alpha-D-Galactose 1-phosphate <=> Diphosphate + UDP-alpha-D-galactose) R01381 (UTP + D-Glucuronate 1-phosphate <=> Diphosphate + UDP-glucuronate) R03077 (UTP + beta-L-Arabinose 1-phosphate <=> Diphosphate + UDP-L-arabinose) R08845 (UTP + alpha-D-Aldose 1-phosphate <=> Diphosphate + UDP-sugar)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G13920.3 eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 0
RefSeq XP_028074210.1 eukaryotic initiation factor 4A-15-like isoform X3 [Camellia sinensis] 0
Swiss-Prot P41379 Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 0
TrEMBL A0A8K0MXS4 Putative Eukaryotic initiation factor 4A-2 OS=Cocos nucifera OX=13894 GN=COCNU_02G019540 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 8 jg18030, jg23950, jg27270, jg36647, jg36903, jg4590, jg4640 ...
jg7945
Aizoaceae Mesembryanthemum crystallinum 4 gene_6755, gene_8081, gene_8082, gene_9431
Amaranthaceae Atriplex hortensis 2 Ah015581, Ah034500
Amaranthaceae Beta vulgaris 3 BVRB_2g034400, BVRB_8g189830, BVRB_9g203030
Amaranthaceae Salicornia bigelovii 6 Sbi_jg19755, Sbi_jg19756, Sbi_jg23471, Sbi_jg23473 ...
Sbi_jg59412, Sbi_jg63236
Amaranthaceae Salicornia europaea 3 Seu_jg17278, Seu_jg17279, Seu_jg23657
Amaranthaceae Suaeda aralocaspica 3 GOSA_00011237, GOSA_00028107, GOSA_00028109
Amaranthaceae Suaeda glauca 4 Sgl43089, Sgl47901, Sgl63656, Sgl68153
Amaranthaceae Chenopodium album 10 gene:ENSEOMG00000011237, gene:ENSEOMG00000016890 ...
gene:ENSEOMG00000018752, gene:ENSEOMG00000019246, gene:ENSEOMG00000019465, gene:ENSEOMG00000020731, gene:ENSEOMG00000031858, gene:ENSEOMG00000045672, gene:ENSEOMG00000050432, gene:ENSEOMG00000051256
Amaranthaceae Chenopodium quinoa 6 CQ.Regalona.r1.2AG0014060, CQ.Regalona.r1.2AG0014070 ...
CQ.Regalona.r1.2BG0016020, CQ.Regalona.r1.2BG0016030, CQ.Regalona.r1.8AG0013490, CQ.Regalona.r1.8BG0014820
Anacardiaceae Pistacia vera 5 pistato.v30117410, pistato.v30224710, pistato.v30224730 ...
pistato.v30259600, pistato.v30261340
Apiaceae Apium graveolens 7 Ag5G01561, Ag7G00390, Ag7G01853, Ag8G00261, Ag8G01983 ...
AgUnG00091, AgUnG00092
Arecaceae Cocos nucifera 6 COCNU_02G001330, COCNU_02G019540, COCNU_03G015520 ...
COCNU_09G006150, COCNU_11G013450, COCNU_11G013460
Arecaceae Phoenix dactylifera 7 gene-LOC103702037, gene-LOC103709577, gene-LOC103713107 ...
gene-LOC103713109, gene-LOC103715524, gene-LOC103717373, gene-LOC103723891
Asparagaceae Asparagus officinalis 4 AsparagusV1_01.2362.V1.1, AsparagusV1_01.621.V1.1 ...
AsparagusV1_05.2352.V1.1, AsparagusV1_06.1043.V1.1
Asteraceae Flaveria trinervia 7 Ftri13G30554, Ftri15G17613, Ftri3G12718, Ftri3G20538 ...
Ftri4G15456, Ftri7G08567, Ftri8G25313
Brassicaceae Arabidopsis thaliana 5 AT1G51380.1, AT1G54270.1, AT1G72730.1, AT3G13920.2 ...
AT3G19760.1
Brassicaceae Eutrema salsugineum 5 Thhalv10011528m.g.v1.0, Thhalv10011544m.g.v1.0 ...
Thhalv10018626m.g.v1.0, Thhalv10020824m.g.v1.0, Thhalv10020832m.g.v1.0
Brassicaceae Schrenkiella parvula 5 Sp1g38030.v2.2, Sp1g40700.v2.2, Sp3g12160.v2.2 ...
Sp3g17780.v2.2, Sp5g27790.v2.2
Brassicaceae Brassica nigra 13 BniB01g044200.2N, BniB01g051250.2N, BniB01g055170.2N ...
BniB02g063060.2N, BniB03g050960.2N, BniB05g070020.2N, BniB06g026370.2N, BniB07g001610.2N, BniB07g004620.2N, BniB07g030750.2N, BniB07g030780.2N, BniB07g051010.2N, BniB07g055250.2N
Casuarinaceae Casuarina equisetifolia 10 Ceq01G0301, Ceq01G0309, Ceq02G0842, Ceq03G2284, Ceq05G0696 ...
Ceq06G0836, Ceq06G1704, Ceq06G2354, Ceq09G0627, Ceq09G0628
Casuarinaceae Casuarina glauca 10 Cgl01G0321, Cgl02G0856, Cgl03G2420, Cgl05G0707, Cgl06G0861 ...
Cgl06G1766, Cgl06G2478, Cgl09G0671, Cgl09G0672, Cgl09G0684
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno12g04520, gene.Cymno13g02290, gene.Cymno17g04600
Dunaliellaceae Dunaliella salina 3 Dusal.0006s00020.v1.0, Dusal.0552s00009.v1.0 ...
Dusal.0888s00003.v1.0
Hydrocharitaceae Thalassia testudinum 3 gene.Thate01g03840, gene.Thate02g00760, gene.Thate05g18780
Malvaceae Hibiscus hamabo Siebold & Zucc. 5 nbisL1-mrna-231, nbisL1-mrna-3338, nbisL1-mrna-4598 ...
nbisL1-mrna-7482, nbisL1-mrna-9392
Nitrariaceae Nitraria sibirica 4 evm.TU.LG01.89, evm.TU.LG03.943, evm.TU.LG07.1262 ...
evm.TU.LG07.652
Plantaginaceae Plantago ovata 3 Pov_00003711, Pov_00013441, Pov_00015332
Plumbaginaceae Limonium bicolor 9 Lb0G36968, Lb2G08398, Lb2G14201, Lb2G14216, Lb3G16956 ...
Lb3G16957, Lb3G18035, Lb3G18041, Lb4G21541
Poaceae Echinochloa crus-galli 12 AH06.2865, AH07.361, AH07.4042, AH07.880, BH06.2663 ...
BH07.1009, BH07.3856, CH01.1256, CH03.4462, CH06.2976, CH07.3921, CH07.761
Poaceae Eleusine coracana subsp. coracana 9 gene-QOZ80_2AG0101490, gene-QOZ80_2AG0151600 ...
gene-QOZ80_2BG0154870, gene-QOZ80_2BG0206970, gene-QOZ80_4AG0307350, gene-QOZ80_5AG0399360, gene-QOZ80_5BG0448050, gene-QOZ80_6AG0549840, gene-QOZ80_6BG0503410
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.2HG0210840.1, HORVU.MOREX.r3.6HG0558540.1 ...
HORVU.MOREX.r3.6HG0633530.1, HORVU.MOREX.r3.7HG0702610.1, HORVU.MOREX.r3.7HG0727510.1
Poaceae Lolium multiflorum 7 gene-QYE76_006390, gene-QYE76_006463, gene-QYE76_008284 ...
gene-QYE76_020352, gene-QYE76_021631, gene-QYE76_035484, gene-QYE76_035764
Poaceae Oryza coarctata 11 Oco01G015450, Oco02G015790, Oco03G002380, Oco03G005800 ...
Oco03G005810, Oco04G002300, Oco04G006020, Oco06G017810, Oco11G016450, Oco12G016700, Oco21G004410
Poaceae Paspalum vaginatum 5 gene-BS78_03G064300, gene-BS78_03G064700 ...
gene-BS78_04G036500, gene-BS78_04G090300, gene-BS78_10G253900
Poaceae Puccinellia tenuiflora 3 Pt_Chr0401086, Pt_Chr0604848, Pt_Chr0605387
Poaceae Sporobolus alterniflorus 13 Chr02G032810, Chr04G019820, Chr05G001030, Chr06G020750 ...
Chr06G035000, Chr09G026920, Chr0G010140, Chr10G021450, Chr11G001120, Chr13G000230, Chr15G026290, Chr19G007120, Chr27G009790
Poaceae Thinopyrum elongatum 8 Tel2E01G942100, Tel5E01G690000, Tel6E01G254100 ...
Tel6E01G368300, Tel6E01G775100, Tel6E01G775300, Tel7E01G532700, Tel7E01G703700
Poaceae Triticum dicoccoides 9 gene_TRIDC6AG015330, gene_TRIDC6AG027230 ...
gene_TRIDC6AG027280, gene_TRIDC6AG061100, gene_TRIDC6BG021100, gene_TRIDC6BG033410, gene_TRIDC6BG071460, gene_TRIDC7AG058390, gene_TRIDC7BG051060
Poaceae Triticum aestivum 19 TraesCS2A02G552800.1, TraesCS2B02G584200.1 ...
TraesCS2D02G553400.1, TraesCS2D02G554300.1, TraesCS6A02G116200.1, TraesCS6A02G186600.1, TraesCS6A02G186800.1, TraesCS6A02G416700.1, TraesCS6B02G144000.1, TraesCS6B02G217700.1, TraesCS6B02G217800.1, TraesCS6B02G472700.1, TraesCS6D02G105000.1, TraesCS6D02G173700.3, TraesCS6D02G401900.1, TraesCS7A02G310000.1, TraesCS7A02G419400.1, TraesCS7B02G320000.1, TraesCS7D02G412200.1
Poaceae Zea mays 6 Zm00001eb190630_P001, Zm00001eb226920_P001 ...
Zm00001eb232200_P002, Zm00001eb240040_P001, Zm00001eb259470_P001, Zm00001eb272920_P004
Poaceae Zoysia japonica 6 nbis-gene-29965, nbis-gene-33746, nbis-gene-34308 ...
nbis-gene-40699, nbis-gene-47426, nbis-gene-9633
Poaceae Zoysia macrostachya 6 Zma_g12187, Zma_g14948, Zma_g17479, Zma_g26194, Zma_g31084 ...
Zma_g33349
Portulacaceae Portulaca oleracea 9 evm.TU.LG03.1988, evm.TU.LG05.2220, evm.TU.LG07.802 ...
evm.TU.LG08.1559, evm.TU.LG14.287, evm.TU.LG15.127, evm.TU.LG19.20, evm.TU.LG22.453, evm.TU.LG24.250
Posidoniaceae Posidonia oceanica 2 gene.Posoc02g10950, gene.Posoc10g04890
Rhizophoraceae Bruguiera sexangula 6 evm.TU.Scaffold_10_RagTag.1375 ...
evm.TU.Scaffold_10_RagTag.694, evm.TU.Scaffold_15_RagTag.341, evm.TU.Scaffold_17_RagTag.669, evm.TU.Scaffold_18_RagTag.687, evm.TU.Scaffold_4_RagTag.1818
Rhizophoraceae Carallia pectinifolia 10 nbisL1-mrna-13797, nbisL1-mrna-17178, nbisL1-mrna-23352 ...
nbisL1-mrna-25759, nbisL1-mrna-26612, nbisL1-mrna-27630, nbisL1-mrna-27668, nbisL1-mrna-27671, nbisL1-mrna-27709, nbisL1-mrna-7111
Rhizophoraceae Ceriops tagal 5 nbisL1-mrna-14506, nbisL1-mrna-7676, nbisL1-mrna-8093 ...
nbisL1-mrna-8888, nbisL1-mrna-8954
Rhizophoraceae Ceriops zippeliana 5 nbisL1-mrna-19994, nbisL1-mrna-4611, nbisL1-mrna-8066 ...
nbisL1-mrna-8747, nbisL1-mrna-8945
Rhizophoraceae Kandelia candel 6 evm.TU.utg000001l.210, evm.TU.utg000004l.50 ...
evm.TU.utg000008l.1027, evm.TU.utg000013l.359, evm.TU.utg000023l.38, evm.TU.utg000033l.487
Rhizophoraceae Kandelia obovata 6 Maker00000055, Maker00004182, Maker00004381, Maker00004787 ...
Maker00014572, Maker00018900
Rhizophoraceae Rhizophora apiculata 6 nbisL1-mrna-10750, nbisL1-mrna-13992, nbisL1-mrna-14858 ...
nbisL1-mrna-16464, nbisL1-mrna-18333, nbisL1-mrna-3900
Rhizophoraceae Rhizophora mangle 7 nbisL1-mrna-1116, nbisL1-mrna-14378, nbisL1-mrna-14846 ...
nbisL1-mrna-22898, nbisL1-mrna-2625, nbisL1-mrna-8022, nbisL1-mrna-8172
Salicaceae Populus euphratica 11 populus_peu02609, populus_peu02613, populus_peu12625 ...
populus_peu13947, populus_peu22056, populus_peu22065, populus_peu23152, populus_peu24345, populus_peu26593, populus_peu28337, populus_peu37881
Solanaceae Lycium barbarum 7 gene-LOC132604232, gene-LOC132604234, gene-LOC132613923 ...
gene-LOC132619740, gene-LOC132635930, gene-LOC132640847, gene-LOC132645464
Solanaceae Solanum chilense 5 SOLCI000318900, SOLCI001353000, SOLCI002413600 ...
SOLCI003389300, SOLCI003577100
Solanaceae Solanum pennellii 6 gene-LOC107004776, gene-LOC107007006, gene-LOC107007007 ...
gene-LOC107022595, gene-LOC107024598, gene-LOC107028541
Tamaricaceae Reaumuria soongarica 6 STRG.21618_chr08_-, STRG.32344_chr09_-, STRG.8158_chr05_- ...
gene_14265, gene_3999, gene_505
Tamaricaceae Tamarix chinensis 5 TC02G1339, TC05G0391, TC05G1664, TC06G2628, TC11G1425
Zosteraceae Zostera marina 4 Zosma04g15770.v3.1, Zosma04g15790.v3.1, Zosma05g19360.v3.1 ...
Zosma06g26830.v3.1
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