Basic Information
Locus ID:
COCNU_02G018110
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 78607788 | 78640350 | - | COCNU_02G018110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 55,241.01 Da | 62.75 | 84.89 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 251 | 299 | 2.62448E-16 | - |
| Pfam | PF12906 | RING-variant domain | 251 | 298 | 1.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 302 | 2.61E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 307 | 1.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 250 | 299 | 7.3E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 243 | 305 | 19.279036 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 135 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010926931.1 | uncharacterized protein LOC105049083 isoform X1 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0I1P0 | E3 ubiquitin-protein ligase MARCH7 OS=Cocos nucifera OX=13894 GN=COCNU_02G018110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology