Basic Information
Locus ID:
COCNU_02G017870
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 77481775 | 77533188 | + | COCNU_02G017870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 96,205.94 Da | 55.41 | 75.97 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 24 | 123 | 3.7084E-12 | - |
| CDD | cd00159 | RhoGAP | 184 | 323 | 2.00368E-33 | - |
| Pfam | PF00620 | RhoGAP domain | 184 | 328 | 1.4E-31 | IPR000198 |
| Pfam | PF00169 | PH domain | 23 | 127 | 1.8E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 615 | 695 | 6.2E-22 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 184 | 378 | 6.08E-35 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 18 | 134 | 1.15E-17 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 11 | 129 | 1.1E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 152 | 377 | 1.5E-42 | IPR008936 |
| SMART | SM00233 | PH_update | 22 | 130 | 2.5E-15 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 181 | 372 | 1.3E-28 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 175 | 375 | 30.241331 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 21 | 128 | 15.2991 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 417 | - | - |
| Coils | Coil | Coil | 605 | 639 | - | - |
| Coils | Coil | Coil | 822 | 842 | - | - |
| Coils | Coil | Coil | 664 | 698 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_010926988.1 | rho GTPase-activating protein 7 isoform X2 [Elaeis guineensis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MY76 | Rho GTPase-activating protein 7 OS=Cocos nucifera OX=13894 GN=COCNU_02G017870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology