Basic Information
Locus ID:
COCNU_02G016250
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Tyrosyl-DNA phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 69147948 | 69158158 | - | COCNU_02G016250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 82,629.42 Da | 51.07 | 80.42 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00060 | FHA | 35 | 157 | 3.92752E-18 | IPR000253 |
| Pfam | PF00498 | FHA domain | 59 | 154 | 3.0E-13 | IPR000253 |
| Pfam | PF06087 | Tyrosyl-DNA phosphodiesterase | 394 | 530 | 2.0E-13 | IPR010347 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 324 | 499 | 9.42E-19 | - |
| SUPERFAMILY | SSF49879 | SMAD/FHA domain | 34 | 172 | 1.44E-19 | IPR008984 |
| Gene3D | G3DSA:2.60.200.20 | - | 49 | 166 | 7.1E-18 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 376 | 499 | 7.3E-22 | - |
| SMART | SM00240 | FHA_2 | 58 | 137 | 2.9E-7 | IPR000253 |
| ProSiteProfiles | PS50006 | Forkhead-associated (FHA) domain profile. | 59 | 137 | 12.254299 | IPR000253 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07400.3 | - | 0 |
| RefSeq | XP_010942389.1 | uncharacterized protein LOC105060408 isoform X2 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0MXN3 | Putative Forkhead-associated (FHA) domain OS=Cocos nucifera OX=13894 GN=COCNU_02G016250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18349 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20431 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031557, Ah031559 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156810 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg2134, Sbi_jg2136, Sbi_jg34371 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2635 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005862 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71130, Sgl74713 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000037797 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0023210, CQ.Regalona.r1.7BG0025820 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012820 |
| Apiaceae | Apium graveolens | 1 | AgUnG01489 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G016250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712405 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1570.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G26280 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012509m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35470.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g028410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2899 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3044 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g10200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.524 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020067 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09536, Lb5G26726 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.5309, BH09.938, CH08.1681, CH09.1050 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0319020, gene-QOZ80_4BG0350420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0164790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043740 |
| Poaceae | Oryza coarctata | 1 | Oco07G004890 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g33050.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G080500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302944, Pt_Chr0703431 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G012130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G516500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG042000, gene_TRIDC2BG044960 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G289700.1, TraesCS2B02G306300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb084530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-7787, nbis-gene-7788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21198 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.198, evm.TU.LG15.766 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g08020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.281 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29073 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6891 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2017 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.179 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001449 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2456 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6135 |
| Salicaceae | Populus euphratica | 2 | populus_peu30400, populus_peu30401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633125 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012650 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4636 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2352 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15080.v3.1 |