Basic Information
Locus ID:
COCNU_02G016230
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 69129116 | 69130451 | + | COCNU_02G016230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 29,297.55 Da | 50.29 | 86.42 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 114 | 0.099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 173 | 206 | 0.022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 38 | 219 | 1.62E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 270 | 5.2E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 28 | 73 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 76 | 114 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 166 | 206 | 3.8E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 173 | 209 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 173 | 209 | 9.124694 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 193 | 207 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_010929534.1 | WD repeat-containing protein LWD1 [Elaeis guineensis] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MXA0 | Putative WD repeat-containing protein LWD1 OS=Cocos nucifera OX=13894 GN=COCNU_02G016230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology