Basic Information
Locus ID:
COCNU_02G014780
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 59161412 | 59162059 | + | COCNU_02G014780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 25,142.53 Da | 66.54 | 68.98 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 169 | 211 | 2.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 214 | 7.07E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 215 | 7.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 210 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 211 | 12.681067 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44581.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_038986585.1 | RING-H2 finger protein ATL57-like [Phoenix dactylifera] | 0 |
| A8Y4B2 | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae OX=6238 GN=sel-11 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8K0I0E8 | Putative E3 ubiquitin-protein ligase ATL44 OS=Cocos nucifera OX=13894 GN=COCNU_02G014780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_02G014780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112090 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1992.V1.1 |