Basic Information
Locus ID:
COCNU_02G014700
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 58946515 | 58947950 | - | COCNU_02G014700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 46,937.13 Da | 48.28 | 83.74 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 26 | 362 | 6.3E-54 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 23 | 378 | 7.26E-54 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 263 | 333 | 3.05E-13 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 41 | 362 | 1.2E-81 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 262 | 333 | 1.2E-81 | IPR029070 |
| SMART | SM00636 | 2g34 | 23 | 362 | 3.5E-61 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 23 | 379 | 50.379189 | IPR001223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 422 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19820.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_010913063.1 | class V chitinase CHIT5b [Elaeis guineensis] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0I0R0 | Class V chitinase CHIT5b OS=Cocos nucifera OX=13894 GN=COCNU_02G014700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology