Basic Information
Locus ID:
COCNU_02G014310
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 56681153 | 56682543 | + | COCNU_02G014310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 41,907.36 Da | 48.56 | 76.05 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 216 | 248 | 0.16 | IPR006597 |
| Pfam | PF01753 | MYND finger | 322 | 361 | 1.0E-7 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 176 | 214 | 0.017 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 144 | 156 | 97.0 | IPR006597 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 316 | 366 | 4.53E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 59 | 114 | 2.35E-8 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 118 | 249 | 1.96E-13 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 107 | 269 | 3.2E-19 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 311 | 366 | 8.2E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 319 | 361 | 10.919942 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 49 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_010905188.1 | F-box protein At1g67340 [Elaeis guineensis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I013 | F-box protein OS=Cocos nucifera OX=13894 GN=COCNU_02G014310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology