Basic Information
Locus ID:
COCNU_02G014250
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 56568011 | 56568601 | - | COCNU_02G014250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 22,483.34 Da | 48.08 | 76.07 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 152 | 2.78E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 156 | 7.3E-6 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038989093.1 | E3 ubiquitin-protein ligase RING1-like [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8K0I0P3 | RING-type domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_02G014250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | COCNU_02G014250, COCNU_16G006120, COCNU_16G006340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112947 |