Basic Information
Locus ID:
COCNU_02G010940
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 45271835 | 45278863 | + | COCNU_02G010940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 34,702.32 Da | 50.83 | 94.22 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 19 | 162 | 6.89349E-49 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 235 | 278 | 4.92262E-25 | - |
| Pfam | PF02225 | PA domain | 66 | 147 | 3.4E-13 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 235 | 278 | 6.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 285 | 1.14E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 151 | 1.7E-9 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 31 | 162 | 6.5E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 283 | 3.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 236 | 277 | 2.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 278 | 12.356501 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_010912506.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Elaeis guineensis] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HZE5 | Receptor homology region, transmembrane domain-and RING domain-containing protein 5 OS=Cocos nucifera OX=13894 GN=COCNU_02G010940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology