Basic Information
Locus ID:
COCNU_02G009000
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 30682872 | 30684540 | + | COCNU_02G009000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 41,455.98 Da | 55.20 | 77.05 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 311 | 351 | 4.4E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 55 | 108 | 2.4E-5 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 312 | 356 | 2.09E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 119 | 240 | 3.66E-13 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 302 | 356 | 3.4E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 106 | 262 | 4.7E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 309 | 351 | 10.868089 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_008801684.2 | F-box protein At1g67340-like [Phoenix dactylifera] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0HZN7 | F-box protein OS=Cocos nucifera OX=13894 GN=COCNU_02G009000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology